Released 5/26/00
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Basic Bioinformatics: From Sequence Analysis to Genome Analysis
Bioinformatics
Summary of Course
Overview
Why
What
How
Historical Background
Conceptual Background
Conceptual Background (cont)
Types of Algorithms
Types of Algorithms (cont)
Tools—Nucleotide Sequence Analysis
Tools— Protein Sequence Analysis
Tools— General Sequence Analysis
Tools— Function Prediction
Tools— Structure Prediction
Tools— Database Mining
Software Program Sources
Database Resources
Database Resources (cont)
Getting Sequence Data
Bioinformatics Operator Basics
Bioinformatics Operator Basics (cont)
Simple Entrez Session
National Center for Biotechnology (NCBI) Website
Entrez Browser
Entrez Monkey Nucleotide Sequence Search
Entrez Nucleotide Query
Entrez Nucleotide Query Results
Entrez Nucleotide Query Final Result
Simple Blast Search
Entrez Mouse Nucleotide Sequence Search
Entrez Protein Query
Entrez Protein Query Results
FASTA Protein Sequence Result
Highlight and Copy Protein Sequence Result
BLAST Search Tool
Basic BLAST Search
Paste Sequence into Basic BLAST Search
BLAST Results
BLAST Results (cont'd)
Summary
Where to get more information
Final Note
Author: William B. Mattes
Email: william.b.mattes@am.pnu.com
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