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Table of Contents
Basic Bioinformatics: From
Sequence Analysis to Genome Analysis
Bioinformatics
Summary of Course
Overview
Why
What
How
Historical Background
Conceptual Background
Conceptual Background (cont)
Types of Algorithms
Types of Algorithms
Types of Algorithms
(cont)
Types of Algorithms
(cont)
Types of Algorithms
(cont)
Tools
- Nucleotide Sequence Analysis
Tools - Protein
Sequence Analysis
Tools - General
Sequence Analysis
Tools - General
Sequence Analysis
Tools - General Sequence
Analysis
Tools - Function
Prediction
Tools - Structure
Prediction
Tools - Database
Mining
Software Program Sources
Database Resources
Database Resources
(cont)
Getting Sequence Data
Bioinformatics Operator
Basics
Bioinformatics Operator
Basics (cont)
Bioinformatics Operator
Basics (cont)
Simple Entrez Session
National Center for
Biotechnology (NCBI) Website
Entrez Browser
Entrez Monkey Nucleotide
Sequence Search
Entrez Nucleotide Query
Entrez Nucleotide Query
Results
Entrez Nucleotide Query
Final Result
Simple Blast Search
Entrez Mouse Nucleotide
Sequence Search
Entrez Nucleotide Query
Entrez Nucleotide Query
Results
Entrez Nucleotide Query
Final Result
Entrez Protein Query
Entrez Protein Query
Results
FASTA Protein Sequence
Result
Highlight and Copy
Protein Sequence Result
BLAST Search Tool
Basic BLAST Search
Paste Sequence into
Basic BLAST Search
BLAST Results
BLAST Results (cont'd)
Summary
Where to get more information
Final Note
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About SOT
